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YING BEIWEN

 
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NameYING BEIWEN
e-mailying.beiwen.gfu.tsukuba.ac.jp
URLhttp://www.u.tsukuba.ac.jp/~ying.beiwen.gf/index.html
AffiliationUniversity of Tsukuba
SectionFaculty of Life and Environmental Sciences
Job titleAssociate Professor
DegreePhD. (Biosciences)(The University of Tokyo)

Research Interests

 
Bacterial growth , Genome reduction , Experimental evolution , Gene expression , Machine learning , Bioinformatics

Research Areas

 
  • Genome science / System genome science / 
  • Basic biology / Evolutionary biology / 
  • Agricultural chemistry / Applied microbiology / 
  • Computational science / Computational science / 
  • Informatics / Life/Health/Medical informatics / 

Academic & Professional Experience

 
2013
   
 
Associate Professor, University of Tsukuba
 
2007
 - 
2013
Assistant Professor, Associate Professor, Osaka University
 
2006
 - 
2007
Postdoc, Centre national de la recherche scientifique (CNRS)
 
2005
 - 
2006
Research Fellow, The University of Tokyo
 

Education

 
2000
 - 
2005
Graduate School of Integrative Sciences, The University of Tokyo
 

Published Papers

 
YING, BEIWEN;YAMA, Kazuma
Front Microbiol   9    Sep 2018   [Refereed]
Transcriptomes not only reflect the growth status but also link to the genome in bacteria. To investigate if and how genome or cellular state changes contribute to the gene expression order, the growth profile-associated transcriptomes of an assor...
TSUCHIYA, Kouhei;CAO, Yang-Yang;KUROKAWA, Masaomi;ASHINO, Kazuha;YOMO, Tetsuya;YING, BEIWEN
BMC Microbiol   18    Sep 2018   [Refereed]
Background: Bacterial growth is an important topic in microbiology and of crucial importance to better understand living cells. Bacterial growth dynamics are quantitatively examined using various methods to determine the physical, chemical or biol...
KUROKAWA, Masaomi;YING, BEIWEN
figshare. Dataset.      Apr 2018   [Refereed]
A decay effect of bacterial growth rate associated with genome reduction
TSUCHIYA, Kouhei;CAO, Yang-Yang;KUROKAWA, Masaomi;ASHINO, Kazuha;YOMO, Tetsuya;YING, BEIWEN
bioRxiv      Apr 2018
Shibai, Atsushi;Takahashi, Yusuke;Ishizawa, Yuka;Motooka, Daisuke;Nakamura, Shota;YING, BEIWEN;Tsuru, Saburo
Scientific Reports   7(1) -14531   Nov 2017   [Refereed]
Mutations are induced by not only intrinsic factors such as inherent molecular errors but also by extrinsic mutagenic factors such as UV radiation. Therefore, identifying the mutational properties for both factors is necessary to achieve a compreh...

Books etc

 
Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria
YING,BEIWEN;YOMO,Tetsuya (Part:Contributor, Comparative analyses of bacterial transcriptome reorganisation in response to temperature increase.)
May 2016   
Advances in Applied Biotechnology
YING,BEIWEN;YOMO,Tetsuya (Part:Contributor, Built-in synthetic gene circuits in Escherichia coli – methodology and applications.)
Jan 2012   
Protein Engineering Handbook
YING,BEIWEN;UEDA,Takuya (Part:Contributor, Protein generation using a reconstituted system.)
Jan 2009   
Cell-Free Expression
YING,BEIWEN;SHIMIZU,Yoshihiro;UEDA,Takuya (Part:Contributor, The PURE system: a minimal cell-free translation system.)
Dec 2007   

Conference Activities & Talks

 
A challenge of predicting the contribution of chemicals to bacterial growth by machine learning
YING, BEIWEN;芦野一葉;菅野健太;天笠俊之
日本分子生物学会第41回大会   28 Nov 2018   
大腸菌における非必須遺伝子と増殖速度の関係
劉柳;YING, BEIWEN
日本ゲノム微生物学会第12回大会   5 Mar 2018   
ゲノム縮小と大腸菌増殖の相関
黒川真臣;YING, BEIWEN
日本ゲノム微生物学会第12回大会   5 Mar 2018   
ヒスチジン枯渇環境に適応した大腸菌に対する解析
日原奨希;YING, BEIWEN
日本ゲノム微生物学会第12回大会   5 Mar 2018   
大腸菌広域欠失株の増殖に対する数理的評価
黒川真臣;YING, BEIWEN
日本ゲノム微生物学会第10回大会   4 Mar 2016   

Teaching Experience

 
  • Biochemistry (University of Tsukuba.)
  • Lecture on Environmental Molecular Microbiology (University of Tsukuba.)
  • Advanced Research in Integrative Environment and Biomass Sciences I (University of Tsukuba.)
  • Advanced Research in Integrative Environment and Biomass Sciences II (University of Tsukuba.)
  • Specialized Laboratory in Applied Biological Chemistry (University of Tsukuba.)

Association Memberships

 
American Society for Microbiolgy , Society of Genome Microbiolgy, Japan , The Molecular Biology Society of Japan , JAPANESE SOCIETY OF MICROBICAL ECOLOGY

Patents

 
2018-088250 : 培養環境判定装置、培養環境判定方法、及びプログラム
YING, BEIWEN;Amagasa, Toshiyuki
22B072002-1 : リボソームディスプレイ
UEDA,Takuya;OHASHI,Hiroyuki;SHIMIZU,Yoshihiro;YING,BEIWEN;KANAMORI,Takashi