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YING BEIWEN

 
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NameYING BEIWEN
e-mailying.beiwen.gfu.tsukuba.ac.jp
URLhttp://www.u.tsukuba.ac.jp/~ying.beiwen.gf/index.html
AffiliationUniversity of Tsukuba
SectionFaculty of Life and Environmental Sciences
Job titleAssociate Professor
DegreePhD. (Biosciences)(The University of Tokyo)

Research Interests

 
Bacterial growth , Genome reduction , Experimental evolution , Gene expression , Machine learning , Bioinformatics

Research Areas

 
  • Genome science / System genome science / 
  • Basic biology / Evolutionary biology / 
  • Agricultural chemistry / Applied microbiology / 
  • Computational science / Computational science / 
  • Informatics / Life/Health/Medical informatics / 

Academic & Professional Experience

 
2013
   
 
Associate Professor, University of Tsukuba
 
2007
 - 
2013
Assistant Professor, Associate Professor, Osaka University
 
2006
 - 
2007
Postdoc, Centre national de la recherche scientifique (CNRS)
 
2005
 - 
2006
Research Fellow, The University of Tokyo
 

Education

 
2000
 - 
2005
Graduate School of Integrative Sciences, The University of Tokyo
 

Committee Memberships

 
2019
   
 
Scientific Reports (Nature Publishing Group)  Editorial Board Member
 
2018
   
 
Frontiers in Microbiology  Review Editor
 
2015
   
 
Society of Genome Microbiolgy, Japan  Councilor
 

Published Papers

 
ASHINO, Kazuha;SUGANO, Kenta;AMAGASA, Toshiyuki;YING, BEIWEN
SCIENTIFIC REPORTS   9    May 2019   [Refereed]
Predicting the contribution of media components to bacterial growth was first initiated by introducing machine learning to high-throughput growth assays. A total of 1336 temporal growth records corresponding to 225 different media, which were comp...
YING, BEIWEN;YAMA, Kazuma
Front Microbiol   9    Sep 2018   [Refereed]
Transcriptomes not only reflect the growth status but also link to the genome in bacteria. To investigate if and how genome or cellular state changes contribute to the gene expression order, the growth profile-associated transcriptomes of an assor...
TSUCHIYA, Kouhei;CAO, Yang-Yang;KUROKAWA, Masaomi;ASHINO, Kazuha;YOMO, Tetsuya;YING, BEIWEN
BMC Microbiol   18    Sep 2018   [Refereed]
Background: Bacterial growth is an important topic in microbiology and of crucial importance to better understand living cells. Bacterial growth dynamics are quantitatively examined using various methods to determine the physical, chemical or biol...
KUROKAWA, Masaomi;YING, BEIWEN
figshare. Dataset.      Apr 2018   [Refereed]
A decay effect of bacterial growth rate associated with genome reduction
TSUCHIYA, Kouhei;CAO, Yang-Yang;KUROKAWA, Masaomi;ASHINO, Kazuha;YOMO, Tetsuya;YING, BEIWEN
bioRxiv      Apr 2018

Books etc

 
Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria
YING,BEIWEN;YOMO,Tetsuya (Part:Contributor, Comparative analyses of bacterial transcriptome reorganisation in response to temperature increase.)
May 2016   
Advances in Applied Biotechnology
YING,BEIWEN;YOMO,Tetsuya (Part:Contributor, Built-in synthetic gene circuits in Escherichia coli – methodology and applications.)
Jan 2012   
Protein Engineering Handbook
YING,BEIWEN;UEDA,Takuya (Part:Contributor, Protein generation using a reconstituted system.)
Jan 2009   
Cell-Free Expression
YING,BEIWEN;SHIMIZU,Yoshihiro;UEDA,Takuya (Part:Contributor, The PURE system: a minimal cell-free translation system.)
Dec 2007   

Conference Activities & Talks

 
機械学習を用いた集団増殖における環境因子の貢献度分析
YING, BEIWEN
Future Trend in Polymer Science 2018 (FTiPS2018)   20 Mar 2019   
大腸菌増殖における培地成分の寄与度の学習分析
YING, BEIWEN;芦野一葉;菅野健太;天笠俊之
日本農芸化学会2019年東京大会   24 Mar 2019   
微生物の物質生産に適した化学環境条件の網羅的探索
内田圭裕;桝尾俊介;高谷直樹;YING, BEIWEN
超異分野学会2019   8 Mar 2019   
大腸菌の増殖を決定する環境要因の判定と予測
芦野一葉;菅野健太;天笠 俊之;YING, BEIWEN
日本ゲノム微生物学会第13回大会   7 Mar 2019   
変異による適応度貢献のゲノム縮小に伴う増加
黒川真臣;YING, BEIWEN
日本ゲノム微生物学会第13回大会   6 Mar 2019   

Teaching Experience

 
  • Biochemistry (University of Tsukuba.)
  • Lecture on Environmental Molecular Microbiology (University of Tsukuba.)
  • Advanced Research in Integrative Environment and Biomass Sciences I (University of Tsukuba.)
  • Advanced Research in Integrative Environment and Biomass Sciences II (University of Tsukuba.)
  • Specialized Laboratory in Applied Biological Chemistry (University of Tsukuba.)

Association Memberships

 
JAPAN SOCIETY FOR BIOSCIENCE, BIOTECHNOLOGY, AND AGROCHEMISTRY , American Society for Microbiolgy , JAPANESE SOCIETY OF MICROBICAL ECOLOGY , Society of Genome Microbiolgy, Japan , The Molecular Biology Society of Japan

Patents

 
2018-088250 : 培養環境判定装置、培養環境判定方法、及びプログラム
YING, BEIWEN;Amagasa, Toshiyuki
22B072002-1 : リボソームディスプレイ
UEDA,Takuya;OHASHI,Hiroyuki;SHIMIZU,Yoshihiro;YING,BEIWEN;KANAMORI,Takashi